Yikes! I somehow failed to recognize that today is International Rock Flipping Day, 2010!
So what's a thesis-writing, easily distracted grad student to do? Why run outside and flip some rocks, of course. Pics will be posted below once I get them cropped and uploaded to the intertubes.
[Brief pause while I run outside with a camera and flashlight...]
Turns out, there aren't too many rocks worth living under in our yard - and the few that are are a bit on the huge end of the spectrum. Still, I managed to snap some decent photos of a few of the invertebrates living around our house. Pictures will be posted below tomorrow.
Showing posts with label ecology. Show all posts
Showing posts with label ecology. Show all posts
Oh no! I (almost) missed IRFD, 2010!!!
By
Paul
on
Sunday, September 12, 2010 at 10:40 PM
Labels: amphibians, arthropods, ecology, education, nature, reptiles, wildlife

Labels: amphibians, arthropods, ecology, education, nature, reptiles, wildlife
No Child Left Inside on Earth Day 2010
By
Paul
on
Sunday, April 18, 2010 at 12:24 AM
Labels: conservation, ecology, education, natural resources, science and society

Labels: conservation, ecology, education, natural resources, science and society
Many will soon be celebrating the 40th anniversary of Earth Day (April 22, 2010) by participating in various events and educational opportunities. The No Child Left Inside (NCLI) Coalition is working to get kids outside as part of their efforts to promote environmental education and awareness -- a fantastic idea! If you aren't familiar with the importance of getting kids outside and involved in hands-on learning experiences, check out this short video:
For more information about getting outside on the Earth Day 2010, check out their Go Outside for Earth Day tool-kit resources.
A central goal of the NCLI coalition is to ensure public school students are provided adequate environmental education so they can meet future environmental challenges with well-informed and effective solutions. To this end, they are working to pass the No Child Left Inside Act, which you can read more about on their website -- http://www.NCLIcoalition.org/ -- and below...
For more information about getting outside on the Earth Day 2010, check out their Go Outside for Earth Day tool-kit resources.
A central goal of the NCLI coalition is to ensure public school students are provided adequate environmental education so they can meet future environmental challenges with well-informed and effective solutions. To this end, they are working to pass the No Child Left Inside Act, which you can read more about on their website -- http://www.NCLIcoalition.org/ -- and below...
Background: The No Child Left Inside Coalition is a national coalition of over 1600 business, health, youth, faith, recreational, environmental, and educational groups representing over 50 million Americans. The entire list of coalition members is available here. The Coalition was formed in 2007 to alert Congress and the public to the need for our schools to devote more resources and attention to environmental education.
Goal: The Coalition is working to support legislation sponsored by Rep. John Sarbanes of Maryland and Sen. Jack Reed of Rhode Island to ensure that every student achieves basic environmental literacy. The No Child Left Inside Act would amend the Elementary and Secondary Education Act (No Child Left Behind) to include environmental education for the first time. The legislation would provide new funding for environmental education, particularly to develop rigorous standards, train teachers and to develop state environmental literacy plans. It also proposes giving states that develop such environmental literacy plans access to additional funds.
Mid-week Reptilians #14: Varanids!
By
Paul
on
Thursday, March 18, 2010 at 4:54 PM
Labels: ecology, entertainment, mid-week reptilians, reptiles, wildlife

Labels: ecology, entertainment, mid-week reptilians, reptiles, wildlife
Royal Society's Infectious Disease Articles: Free for February
The Royal Society is allowing free online access to some of their infectious disease articles through the end of the week. It's a bit of advertising on their part, but still an opportunity to skim the selection and maybe read an article or three.
All Royal Society infectious disease content is currently free to access.
The Royal Society's journals regularly publish content covering scientific research into infectious diseases and you can access all articles FREE until the end of February at:
Highlighted content includes:
'Livestock diseases and zoonoses', edited by FM Tomley and MW Shirley
'Airborne transmission of disease in hospitals', edited by I Eames, JW Tang,
Y Li and P Wilson
'The end of Kuru: 50 years of research into an extraordinary disease', edited
by J Collinge and MP Alpers
'Cross scale influences on epidemiological dynamics', edited by L Matthews
and D Haydon
Access all the above content - and more - FREE until the end of the week at:
We are particularly interested in receiving Theme proposals in this area of science. Find out more about how you can become one of our Guest Editors by contacting claire.rawlinson@royalsociety.org or visiting her at booth 14at the International Congress on Infectious Diseases in Miami on 9-12 March.
Mid-week Reptilian #9: Going Green
By
Paul
on
Thursday, January 14, 2010 at 3:13 PM
Labels: ecology, mid-week reptilians, reptiles, wildlife

Labels: ecology, mid-week reptilians, reptiles, wildlife
Here is some awesome footage of a wild Green Anaconda (Eunectes murinus) eating a Green Iguana (Iguana iguana) at the edge of a pond at Hato Masaguaral, Guarico, Venezuel. It was taken by a friend of mine who was in the area doing some ornithology research. Be sure to click over to the video on youtube and give it the 5-star rating it deserves!
Please Recycle (Your Seal Carcasses...)
Check out this beautiful time-lapse video from the BBC of a seal carcass being recycled under an ice sheet somewhere in the antarctic's McMurdo Sound. By "recycled" I of course mean it's remains are being cleaned up by a bunch of 3-meter nemertean worms, various echinoderms and assorted little arthropods.
[Hat tip to PZ Myers for the link.]
[Hat tip to PZ Myers for the link.]
Mid-week Reptilians #6: Snake vs. Woodpecker
By
Paul
on
Thursday, November 5, 2009 at 5:42 PM
Labels: birds, ecology, mid-week reptilians, reptiles

Labels: birds, ecology, mid-week reptilians, reptiles
Busy week, so this so here's a quickie: a spectacular reptilian interaction that was caught on video in the Amazon.
The caption along side the video (with minor corrections, and the bird's binomial name C. melanoleucos added) explains:
The caption along side the video (with minor corrections, and the bird's binomial name C. melanoleucos added) explains:
On vacation in Peru Yarapa River Lodge we came across a woodpecker knocking on a tree, when we came closer we saw the fight between a [female] woodpecker and a snake.[See below for correct ID of the snake.]
The snake is: Olive whipsnake, [Chironius fuscus]
The Woodpecker is: Crimson crested woodpecker [Campephilus melanoleucos]
Update/Correction:
I spoke with our local herp expert, Harry Green, and the snake is actually not the (typically terrestrial) Chironius species as indicated above. It's actually one of the "Bird-eating Snakes" in the genus Pseustes (maybe this one?). One of the few real bird specialists out there, these snakes are also known as Puffing Snakes, owing to the defensive behavior of puffing up their "throat" (as seen in this video) to ward off would-be attackers.15 Evolutionary Gems from the Journal Nature
By
Paul
on
Monday, October 12, 2009 at 11:20 PM
Labels: ecology, evolution, intelligent design (creationism), nature, science

Labels: ecology, evolution, intelligent design (creationism), nature, science
A friend of mine just alerted me to this "must read" compilation of Nature papers on the evidence for (and utility of) evolutionary theory. It's been out for a while, but I thought it worth sharing.
So why have the authors and Nature put together these articles (and provided them for free to the public)? They explain in the introduction:
Happy reading! :)
Main References for 15 Evolutionary Gems
So why have the authors and Nature put together these articles (and provided them for free to the public)? They explain in the introduction:
Most biologists take for granted the idea that all life evolved by natural selection over billions of years. They get on with researching and teaching in disciplines that rest squarely on that foundation, secure in the knowledge that natural selection is a fact, in the same way that the Earth orbits the Sun is a fact.Below I've provided links to the main papers referenced in the article above (all free to download as PDFs). I highly recommend reading the summaries in the article before diving into the papers themselves, and of course sharing these 15 gems with others.
...We offer here 15 examples published by Nature over the past decade or so to illustrate the breadth, depth and power of evolutionary thinking. We are happy to offer this resource freely and encourage its free dissemination.
Happy reading! :)
Main References for 15 Evolutionary Gems
- Gee, H., Howlett, R. and Campbell, P. 15 Evolutionary Gems. Nature, January (2009). http://dx.doi.org/10.1038/nature07740 or at http://www.nature.com/evolutiongems/
- Land-living ancestors of whales
- Thewissen, J. G. M., Cooper, L. N., Clementz, M. T., Bajpai, S. & Tiwari, B. N. Nature 450, (2007). http://dx.doi.org/10.1038/nature06343
- From water to land
- Daeschler, E. B., Shubin, N. H. & Jenkins, F A. Nature 440, (2006). http://dx.doi.org/10.1038/nature04639
- Shubin, N. H., Daeschler, E. B., & Jenkins, F A. Nature 440, (2006). http://dx.doi.org/10.1038/nature04637
- The origin of feathers
- Chen, P.-J., Dong, Z.-M. & Zhen, S.-N. Nature 391, (1998). http://dx.doi.org/10.1038/nature34356
- Zhang, F., Zhou, Z., Xu, X., Wang, X. & Sullivan, C. Nature 455, (2008). http://dx.doi.org/10.1038/nature07447
- The evolutionary history of teeth
- Kavanagh, K. D., Evans, A. R. & Jernvall, J. Nature 449, 427–432 (2007). http://dx.doi.org/10.1038/nature06153
- The origin of the vertebrate skeleton
- Matsuoka, T. et al. Nature 436, 347–355 (2005). http://dx.doi.org/10.1038/nature03837
- Natural selection in speciation
- McKinnon, J. S. et al. Nature 429, 294–298 (2004). http://dx.doi.org/10.1038/nature02556
- Natural selection in lizards
- Losos, J. B., Schoener, T. W. & Spiller, D. A. Nature 432, 505–508 (2004). http://dx.doi.org/10.1038/nature03039
- A case of co-evolution
- Decaestecker, E. et al. Nature 450, 870–873 (2007). http://dx.doi.org/10.1038/nature06291
- Differential dispersal in wild birds
- Garant, D., Kruuk, L. E. B., Wilkin, T. A., McCleery, R. H. & Sheldon, B. C. Nature 433, 60–65 (2005). http://dx.doi.org/10.1038/nature03051
- Postma, E. & van Noordwijk, A. J. Nature 433, 65-68 (2005). http://dx.doi.org/10.1038/nature03083
- Selective survival in wild guppies
- Olendorf, R. et al. Nature 441, 633–636 (2006). http://dx.doi.org/nature04646
- Evolutionary history matters
- Mehta, R. S. & Wainwright, P. C. Nature 449, 79–82 (2007). http://dx.doi.org/10.1038/nature06062
- Darwin’s Galapagos finches
- Abzhanov, A. et al. Nature 442, 563–567 (2006). http://dx.doi.org/10.1038/nature04843
- Microevolution meets macroevolution
- Gompel, N., Prud’homme, B., Wittkopp, P. J., Kassner, V. A. & Carroll, S. B. Nature 433, 481–487 (2005). http://dx.doi.org/10.1038/nature03235
- Toxin resistance in snakes and clams
- Geffeney, S. L., Fujimoto, E., Brodie, E. D., Brodie, E. D. Jr, & Ruben, P. C. Nature 434, 759–763 ( 2005). http://dx.doi.org/10.1038/nature03444
- Bricelj, V. M. et al. Nature 434, 763–767 (2005). http://dx.doi.org/10.1038/nature03415
- Variation versus stability
- Bergman, A. & Siegal, M. L. Nature 424, 549–552 (2003). http://dx.doi.org/10.1038/nature01765
Lawrence (Larry) Slobodkin (1928-2009)

One could learn a whole lot of ecology just by reading the many studies and publications that followed from some of his work - particularly the classic 1960 paper by Hairston, Smith and Slobodkin (a.k.a. the H.S.S. paper or the paper that gave us the "green world hypothesis").
The Ecological Society of America (ESA) awarded him their highest honor in 2005, the Eminent Ecologist Award. They said of him...
Larry Slobodkin is one of the premier ecologists of our time. He has made lasting contributions to the theoretical and empirical development of ecology. Beyond this, however, many of us have been greatly influenced by the wonderfully original and insightful perspectives that flow from his unfettered mind.
References:
- Hairston N G, Smith F E & Slobodkin L B. Community structure, population control, and competition. American Naturalist 94:421-5, 1960. (PDF)
- More at the Wikipedia page...
It's International Rock Flipping Day!!
By
Paul
on
Sunday, September 20, 2009 at 7:05 AM
Labels: amphibians, arthropods, ecology, nature, reptiles, wildlife

Labels: amphibians, arthropods, ecology, nature, reptiles, wildlife

As I mentioned a couple weeks ago, Sunday September 20th is International Rock Flipping Day - a day to grab a friend or family member and head outdoors to go explore the variety of really cool critters to be found under rocks (or logs, or old plywood, or...).
It's super easy to participate!
To maximize your fun, and minimize any risk of harming you or the critters tucked away under those rocks, please read over the short list of tips and rules here or here. A camera is a must!
Want to share what you find or see what others found this weekend?? Lots of things are already showing up over at Wanderin Weeta's blog, and you can also upload photos to the Flickr group "rockflippingday".
So turn off your computer, maybe call up a friend or neighbor or round up the family, and head outside to your nearest patch of woods, rocky shoreline, or desert wash and flip a rock or two! Get outside and have some fun!
Almost time for International Rock Flipping Day!
By
Paul
on
Friday, September 4, 2009 at 11:05 PM
Labels: amphibians, arthropods, ecology, nature, reptiles, wildlife

Labels: amphibians, arthropods, ecology, nature, reptiles, wildlife
I just noticed on Bug Girl's blog that Wanderin' Weeta is hosting the annual International Rock Flipping Day on Sunday, September 20th.
You're going to join in too, aren't you?
Here in western New York there are plenty of flippable pieces of Devonian shale, and plenty of cool critters living underneath them: various insects, snails, slugs, Scutigera centipedes and other Myriapods, earthworms, a few salamander species, half a dozen or so species of snakes (no venomous species save the few locales away from Ithaca with rarely seen Timber Rattlesnakes and Eastern Massasuagas - no way I'll find one near Ithaca, unfortunately).
While encouraged to flip a rock or two (or three) I think I might have some fun with it... maybe flip a few rocks in a number of different habitats? Maybe flip progressively larger rocks until I can't flip anything more? Some urban, some rural, some wilderness? Other suggestions, anyone?
Hope you get a chance to join the fun! :)
Paraphrasing the rules over on Wanderin' Weeta's blog - if you're joining in for the first time, here's a quick rundown of the procedure:
You're going to join in too, aren't you?
Here in western New York there are plenty of flippable pieces of Devonian shale, and plenty of cool critters living underneath them: various insects, snails, slugs, Scutigera centipedes and other Myriapods, earthworms, a few salamander species, half a dozen or so species of snakes (no venomous species save the few locales away from Ithaca with rarely seen Timber Rattlesnakes and Eastern Massasuagas - no way I'll find one near Ithaca, unfortunately).
While encouraged to flip a rock or two (or three) I think I might have some fun with it... maybe flip a few rocks in a number of different habitats? Maybe flip progressively larger rocks until I can't flip anything more? Some urban, some rural, some wilderness? Other suggestions, anyone?
Hope you get a chance to join the fun! :)
Paraphrasing the rules over on Wanderin' Weeta's blog - if you're joining in for the first time, here's a quick rundown of the procedure:
- On or about September 20th, find your rock and flip it over.
- Record what you find. "Any and all forms of documentation are welcome: still photos, video, sketches, prose, or poetry."
- Replace the rock as you found it; it's someone's home, but...
- as David Steen suggests - "If there are critters underneath, don't place the rock back on top of them, move the animals to the side, replace the rock and let them scurry back."
- Post on your blog, or load your photos to the Flickr group.
- Send me a link. My e-mail address is in my profile, or you can add a comment to any IRFD post.
- Wanderin' Weeta will collect the links, e-mail participants the list, and post it for any and all to copy to their own blogs. (Maybe we can Tweet it, too, this year. Use the hashtag #rockflip.)
Springtime in New York (part III)
By
Paul
on
Tuesday, May 26, 2009 at 5:24 PM
Labels: amphibians, arthropods, birds, ecology, nature, reptiles

Labels: amphibians, arthropods, birds, ecology, nature, reptiles
With spring now turning to summer, here's a few more photos and comments to follow up on part I and part II of "Springtime in New York". Sticking to my promise, I'll leave the insect world behind with a parting nod to another arthropod before getting into more bird, reptile and amphibian pictures.
When most people think of animal mothers and their young, they're likely to think of a family of some mammal or bird. Indeed, familiar urban and suburban animals like birds, deer, foxes and the like can very noticeable when they've got young in tow!
Still, nearly all major groups of organisms contain examples of moms (and dads!) providing some form of parental care for their offspring - far more species in fact that just the furry and feathered species we tend to notice the most!

Young Canada Geese (Branta canadensis), Ithaca, NY - 23 May 2008.
In many spider species, for example, the eggs are carefully bundled up together with various kinds of silk produced by mom, and are then guarded until they hatch. While most young spiders are independent and can fend for themselves, young wolf spiders will spend some extra time under their mother's guard by clinging to her abdomen. Other arachnids (e.g. scorpions) are known to do the same.

A large (dollar coin?) sized wolf spider (species unknown),
Guarding her eggs in Ithaca, NY - 24 May 2009.
Amphibians, on the other hand, are more hands off - they tend to produce offspring that are ready to fend for themselves and need no care from mom or dad once they've hatched.
Similar to the very first vertebrates to adapt to life on land, modern amphibians still need to lay their eggs in water. In most species, these eggs often hatch long after the parents have left, and the young are left to look after themselves as they mature from fish-like larvae (e.g. tadpoles) to more adult-like forms that can leave the water and live on land.
By late spring a variety of frog, toad and salamander larvae can be found in ponds and streams near Ithaca ( full list of these species and other information can be found here at the New York Herp Atlas (DEC) website). Some species have clear preferences for where they lay their eggs. For example, the two-lined and spring salamanders prefer moving water, while others like most frogs and toads almost exclusively use shallow ponds.

A female American Toad (Bufo americanus) nearing the
end of her stay in a breeding pond near Ithaca, NY
Her offpsring won't need any parental care (Note the biting flies!).
24 May 2009.

American Toad eggs from the same pond as the above female.

A Pickerel Frog (Rana palustris) found along
the grassy banks of a stream near Ithaca, NY - 24 May 2009.

Larval salamander or newt (unknown species - approx. 2cm),
Monkey Run, Ithaca NY - 25 April 2009.

A 4-5" larval Northern Spring Salamander (Gyrinophilus p. porphyriticus)
under a rock along a small stream near Ithaca, NY - 24 May 2009.

Northern Two-lined Salamander (Eurycea b. bislineata)
An adult from near Ithaca, NY - 24 May 2009.
And of course, there are the most observable of all wildlife - the birds! While I was tempted to stick to "herps" for this post - the evolutionary position of birds more than justifies their inclusion here. Still, I'll be brief.
By late spring, a number of the local breeders have returned from their wintering grounds south of New York - some having traveled up from Central or South America or islands in the Caribbean. Many (like the Northern Waterthrush, below) waste little time - and begin to breed almost immediately.

Northern Waterthrush (Seiurus noveboracensis) with
nest material, Cornell Lab of Ornithology.
Ithaca, NY - 4 May 2008.

American Robin (Turdus migratorius) with
nest material, Cornell Lab of Ornithology.
Ithaca, NY - 4 May 2008.
Resident or shorter-distance migrants have in some cases already begun to breed by the time these migrants return. This adult red-tailed hawk, for example, is taking a young Cottontail Rabbit to its almost adult-sized chick up in a nest on Cornell campus.

A Red-tailed Hawk (Buteo jamaicensis) with a prey item
(a young Eastern Cottontail Rabbit) near the hawk's nest,
Cornell University, Ithaca NY - 29 April 2009.
Finally, I'll end with a few shots of our local snakes. Many snakes like the locally uncommon Black Ratsnake (Pantherophis o. obsoleta) emerge from hibernation in spring, and after their first shed will mate and lay their eggs once it's warm enough to maintain the higher temperatures they'll need to hatch later in the summer. Others, like the Brown Snake and the Garter Snake (T. sertalis) are viviparous, meaning they give birth to live young - usually in late summer around the time other snakes eggs are hatching.

Dekay's Brown Snake (Storeria dekayi dekayi)
near Ithaca, NY - 24 May 2009.

Northern Ring-necked Snake (Diadophis punctatus edwardsii)
A rear-fanged snake, though it rarely bites. It's venom doesn't
appear to affect humans, only it's prey (e.g. salamanders).
This one was found near Ithaca, NY - 24 May 2009.

Black Ratsnake (Pantherophis o. obsoleta)
Note the opaque eyes, indicating it's about to shed.
Seen near Ithaca, NY - 9 May 2009.
When most people think of animal mothers and their young, they're likely to think of a family of some mammal or bird. Indeed, familiar urban and suburban animals like birds, deer, foxes and the like can very noticeable when they've got young in tow!
Still, nearly all major groups of organisms contain examples of moms (and dads!) providing some form of parental care for their offspring - far more species in fact that just the furry and feathered species we tend to notice the most!
In many spider species, for example, the eggs are carefully bundled up together with various kinds of silk produced by mom, and are then guarded until they hatch. While most young spiders are independent and can fend for themselves, young wolf spiders will spend some extra time under their mother's guard by clinging to her abdomen. Other arachnids (e.g. scorpions) are known to do the same.
Guarding her eggs in Ithaca, NY - 24 May 2009.
Amphibians, on the other hand, are more hands off - they tend to produce offspring that are ready to fend for themselves and need no care from mom or dad once they've hatched.
Similar to the very first vertebrates to adapt to life on land, modern amphibians still need to lay their eggs in water. In most species, these eggs often hatch long after the parents have left, and the young are left to look after themselves as they mature from fish-like larvae (e.g. tadpoles) to more adult-like forms that can leave the water and live on land.
By late spring a variety of frog, toad and salamander larvae can be found in ponds and streams near Ithaca ( full list of these species and other information can be found here at the New York Herp Atlas (DEC) website). Some species have clear preferences for where they lay their eggs. For example, the two-lined and spring salamanders prefer moving water, while others like most frogs and toads almost exclusively use shallow ponds.
end of her stay in a breeding pond near Ithaca, NY
Her offpsring won't need any parental care (Note the biting flies!).
24 May 2009.
the grassy banks of a stream near Ithaca, NY - 24 May 2009.
Monkey Run, Ithaca NY - 25 April 2009.
under a rock along a small stream near Ithaca, NY - 24 May 2009.
An adult from near Ithaca, NY - 24 May 2009.
And of course, there are the most observable of all wildlife - the birds! While I was tempted to stick to "herps" for this post - the evolutionary position of birds more than justifies their inclusion here. Still, I'll be brief.
By late spring, a number of the local breeders have returned from their wintering grounds south of New York - some having traveled up from Central or South America or islands in the Caribbean. Many (like the Northern Waterthrush, below) waste little time - and begin to breed almost immediately.
nest material, Cornell Lab of Ornithology.
Ithaca, NY - 4 May 2008.
nest material, Cornell Lab of Ornithology.
Ithaca, NY - 4 May 2008.
Resident or shorter-distance migrants have in some cases already begun to breed by the time these migrants return. This adult red-tailed hawk, for example, is taking a young Cottontail Rabbit to its almost adult-sized chick up in a nest on Cornell campus.

(a young Eastern Cottontail Rabbit) near the hawk's nest,
Cornell University, Ithaca NY - 29 April 2009.
Finally, I'll end with a few shots of our local snakes. Many snakes like the locally uncommon Black Ratsnake (Pantherophis o. obsoleta) emerge from hibernation in spring, and after their first shed will mate and lay their eggs once it's warm enough to maintain the higher temperatures they'll need to hatch later in the summer. Others, like the Brown Snake and the Garter Snake (T. sertalis) are viviparous, meaning they give birth to live young - usually in late summer around the time other snakes eggs are hatching.
near Ithaca, NY - 24 May 2009.
A rear-fanged snake, though it rarely bites. It's venom doesn't
appear to affect humans, only it's prey (e.g. salamanders).
This one was found near Ithaca, NY - 24 May 2009.
Note the opaque eyes, indicating it's about to shed.
Seen near Ithaca, NY - 9 May 2009.
Springtime in New York (part II)

Some of my favorite places to frequent during spring are the many woodland swamps, wetlands and creeks in the greater Ithaca area. The reasons are twofold: First, these areas host a variety of organisms during the warmer months, including those mentioned above. Second, visiting these areas before they become thick with mosquitoes and biting flies tends to make for much more pleasant visit!
Like birds, some insects (e.g. some adult moths and dragonflies) migrate to avoid the harsh northern winters. Others overwinter and endure the harsh conditions by altering their physiology to avoid the dangers of freezing or by finding more hospitable environments (like the bottoms of streams and lakes). In either case, the result is that they are some of the first to be found each spring as temperatures warm and the world again becomes a hospitable place for these little critters.

This larvae likely spent the winter at the bottom of this marshy
area where it endured the cold, New York winter.
25 April 2009 - Summerhill, NY.
For those individuals that are lucky enough to survive the winter, the spring warmth is a mixed bag. Not all invertebrates awake in spring and find the world a cozy hospitable place! Just as the world has again become a livable place for the caddisfly above, so to has it returned to a state amenable to predators like the tiger beetle.

25 Apr 2009 - Summerhill, Cayuga Co., NY.

25 April 2009 - Summerhill, Cayuga Co., NY
While these little killing machines might not seem like the most friendly of insects, these and other predatory insects play an important role in keeping other insects (e.g. the kind that might otherwise destroy plants important to people or the local ecosystem) under control. For a more familiar example, the "ladybug" is another such predator, and is even used commercially in agriculture to control damaging agricultural pests like aphids.
All organisms have basic requirements necessary to live and reproduce, and the vast majority rely upon other organisms to obtain the requisite resources. Predatory organisms like the tiger beetle rely upon their prey for resources, while other organisms thrive on non-living resources - including those unlocked from the grip of winter each spring. The growth of plants and other primary producers such as the Trout Lily (Erythronium americanum) pictured above help to capture the light's energy and feed it into local (and hence global) food web.
While spring is often considered a time of rebirth, it's also a time of some heavy-duty recycling! With all the growth, scarce resources can't be left to go to waste - and organisms that keep those nutrients in the local food web can provide an essential resource for other organisms. While much of this recycling is done by the work of microscopic organisms, some of it is done by larger organisms like the Margined Carrion Beetle (Oiceoptoma noveboracense).

feeding and breeding on a White-tailed Deer carcass.
25 April 2009 - Summerhill, Cayuga Co., NY
I've been having too much fun with my new macro lens, so I'll leave the insect world for now. In an upcoming post, I'll take a look at some more of our local reptiles and amphibians - so stay tuned for part III!
Springtime in New York (part I)
Here in western New York, winter can drag on well into April. Hope for spring comes early as the non-stop cold of winter subsides. For nearly two months afterward, rare spring-like days fuel hope for an early spring, but those hopes are quickly squashed by the next bitter cold storm.
This past weekend, however, it became abundantly clear - spring has finally arrived!

A spotted salamander (Ambystoma maculatum) crossing a road
near a breeding pond - 26 March 2007, Tompkins Co., New York.
Here, the first signs of spring begin with the reappearance of rain, around late March into early April. For many nature-loving biology students here at Cornell, this is the much anticipated cue for the local frogs and Ambystoma salamanders to migrate to nearby ponds and vernal pools for their annual orgies. To witness these mass migrations (and hear the sometimes deafening roar of so many calling frogs) is a pretty darn cool experience!
Other than the novelty of the whole experience, it's also great opportunity to learn about these cute little critters. For example, salamanders are somewhat unique among amphibians as nearly all other amphibians fertilize their eggs externally (sperm doesn't meet egg until after the female has deposited them). In most salamander species, males produce a "sperm packet" called a spermatophore which they release during amplexus with the females. This spermatophore is then taken up into the reproductive tract by the female to use for internal fertilization of the eggs.
More signs of spring begin to appear while the amphibian eggs are incubating, preparing to hatch another generation of tadpoles and larval salamanders. The remaining winter birds have mostly left and some locally breeding ("summer") bird species begin to return to the area. Trees are beginning to bud, plants begin sprouting, insects come crawling out of the woodwork and begin to fill the air again.

A female Rough-legged Hawk (Buteo lagopus) on the
wintering grounds - 28 Feb 2009, Tompkins Co., New York.
Here again, we can witness this spectacle of migration, though this time on a much, much larger scale!
The past few days of warm weather and winds out of the south make up great conditions for bird migration: basically these weather patterns are a sort of climatological express train for birds wintering south of the U.S. When the weather is right, these migrants can catch a ride north high up on some of those northbound winds, maximizing their energy use over the long journey and minimizing the time spent in unfamiliar territory exposed to predators.
This spring, however, things are a little different. This weekend (April 25), we had near perfect weather to hail the arrival of our returning migrants. Being the bird-o-holic that I am, the start of spring migration is usually more than enough to keep me entertained.
This year, instead of out running around with my new telephoto snapping bird pictures, I have a new toy... a new 100mm macro lens! How does this change things? Stay tuned for "part II" where I'll share a few photos of the small-scale side of spring.

A mass of amphibian eggs from a roadside wetland.
25 March 2007, Summerhill, Cayuga Co., NY
This past weekend, however, it became abundantly clear - spring has finally arrived!

near a breeding pond - 26 March 2007, Tompkins Co., New York.
Here, the first signs of spring begin with the reappearance of rain, around late March into early April. For many nature-loving biology students here at Cornell, this is the much anticipated cue for the local frogs and Ambystoma salamanders to migrate to nearby ponds and vernal pools for their annual orgies. To witness these mass migrations (and hear the sometimes deafening roar of so many calling frogs) is a pretty darn cool experience!
Other than the novelty of the whole experience, it's also great opportunity to learn about these cute little critters. For example, salamanders are somewhat unique among amphibians as nearly all other amphibians fertilize their eggs externally (sperm doesn't meet egg until after the female has deposited them). In most salamander species, males produce a "sperm packet" called a spermatophore which they release during amplexus with the females. This spermatophore is then taken up into the reproductive tract by the female to use for internal fertilization of the eggs.
More signs of spring begin to appear while the amphibian eggs are incubating, preparing to hatch another generation of tadpoles and larval salamanders. The remaining winter birds have mostly left and some locally breeding ("summer") bird species begin to return to the area. Trees are beginning to bud, plants begin sprouting, insects come crawling out of the woodwork and begin to fill the air again.

wintering grounds - 28 Feb 2009, Tompkins Co., New York.
Here again, we can witness this spectacle of migration, though this time on a much, much larger scale!
The past few days of warm weather and winds out of the south make up great conditions for bird migration: basically these weather patterns are a sort of climatological express train for birds wintering south of the U.S. When the weather is right, these migrants can catch a ride north high up on some of those northbound winds, maximizing their energy use over the long journey and minimizing the time spent in unfamiliar territory exposed to predators.
This spring, however, things are a little different. This weekend (April 25), we had near perfect weather to hail the arrival of our returning migrants. Being the bird-o-holic that I am, the start of spring migration is usually more than enough to keep me entertained.
This year, instead of out running around with my new telephoto snapping bird pictures, I have a new toy... a new 100mm macro lens! How does this change things? Stay tuned for "part II" where I'll share a few photos of the small-scale side of spring.

25 March 2007, Summerhill, Cayuga Co., NY
Experiments, Mathematics and Theory in Ecology (part II)
I thought it was time that I made good on my promise to follow up my previous post regarding experiments, theory and science in ecology (and related disciplines). We left off asking the question "Why has it taken so long for some of the sciences [e.g. ecology] to progress to their current state?" For what it's worth, here are my two cents on the matter:
To avoid unnecessary suspense, here is the quick version of at least some of the major factors contributing to the (relatively) recent advancement of ecology (and other areas of science):
Ecology is a relatively new science - born of numerous biological disciplines, only arriving as its own field in the late 1800s to early 1900s. It is broad and overarching in scope, and is rooted in many of the other sciences - after all, that bit about the environment in the given definition of ecology frequently requires ecologists to dabble in other areas of the physical and natural sciences in order to answer ecological questions. Because of this, progress in other scientific fields affect progress in ecology (e.g. imagine doing ecological research without chemistry or genetics!).
So what about that "using the scientific method" bit? Just to give things some context (and yes, this is a bit of a tangent), consider the question "How long have people been using critical thought and (even crude implementations of) the scientific method as a way to understand the physical and natural world?" If you need a refresher on the history of life and the geologic timescale, you might check out my previous post on the subject, or the geologic time scale page on Wikipedia.
The punchline here is that modern humans are thought to have appeared around 200,000+ years ago with the first known attempts to try and learn about the world through reason and careful observation of natural phenomena occurring a little over 3,000 years ago. So as far as human existence goes, we're pretty new to the game of doing science!
Why this little diversion back to the pleistocene and the formation of the earth? First, because a lot went on before we humans showed up to the party, and that immense history has shaped the world we live in. It took us a while to get even a crude understanding of the big picture (e.g. we recently thought the earth was flat!) and the more that history of life on earth is pieced together (thanks to the efforts of scientists in areas like physics, chemistry, geology, biology, and paleontology), the better we understand today's world and how it works.
Secondly, the human population size and ability to create and share knowledge has changed dramatically in recent centuries, and this has had a resounding impact on the world of science. As you may know, the human population has experienced near exponential population growth over the past few thousand years. It has more than doubled in the past 50 years, and has increased more than 20 fold in the last 1000 years. The increase has raised new problems and questions to address (although, human population growth isn't just a 20th century concern), and it has also lead to increased means of communication, transportation, the accumulation and availability of knowledge (e.g. the internet), and of course the simple increase in worker-hours available for doing scientific research. In short - demographic changes have had (and will likely continue to have) a bit impact on the progression and direction of scientific advancement.
With that, let's finish with a more focused look at ecology (and its ancestors like natural history, biogeography, botany, zoology, etc.), by comparing it to what are commonly considered "hard sciences" like physics and chemistry.
Reaching to my nearest chemistry text (Physical Chemistry, by P. Atkins) and opening it to page 1, the book begins with an introductory chapter laying out what physical chemistry is: "the branch of chemistry that establishes and develops the principles of the subject. Its concepts are used to explain and interpret observations on the physical and chemical properties of matter." The first section of this chapter isn't about chemistry, or physics for that matter - but instead something more basic and fundamental to the topic of physical chemistry: the section is titled "The structure of science," and gives an overview of terms like law, hypothesis, and theory as applied to the subject at hand. This is how (again, in my opinion) every science text book should begin: lay out the foundations of using the scientific method for the subject at hand, then build up from there.
This is in large part what makes a "hard science" - emphasizing how to do good science, and properly applying it to understand natural phenomena. Admittedly, it also helps that atoms and molecules are more predictable in their behavior when it comes to chemistry and physics (versus the behavior of organisms), and in many ways easier to measure for purposes of data collection.
Field ecology, for example has its roots in natural history - which I'll (perhaps unfairly) use here as an example of a field that was slow to move from making observations to making testable hypotheses and conducting experiments to see which ideas about how things work would hold up to empirical evidence. In addition to the significant practical difficulties of studying living organisms, this relatively slow acceptance to use the scientific method to understand ecological phenomena seems attributable to: (1) the fact that life is amazingly diverse, and broad generalizations about that diversity are hard to make. Plus, for some those generalizations can spoil the beauty and mystique of nature, leading to less focus on general and easy to understand phenomena, and more focus on things that are unique, complex and harder to understand; and (2) insightful observations of natural (undisturbed) phenomena were long deemed valuable enough - which can elevate the process of observation above the importance of doing experiments (that is, testing hypotheses) - distracting from the development of general theories by the scientific method, while perhaps over-focusing on describing observed phenomena.
As technology and our understanding from other areas in science have progressed, so to have our observational capabilities (and thus what sorts of things we can test experimentally). In ecology and other areas of biology, these advancements have opened up entire new worlds to observe and questions to be answered.
Early on, physics and chemistry had had a few things going in their favor in this regard. First, they are by their very nature easier to think about and study in a quantitative and general sense (perhaps early physics more so than early chemistry). This imparts to them three important qualities as disciplines in science. First, theories apply broadly to natural phenomena (e.g. nearly all objects fall just the same when dropped from a moderate distance - contrast with understanding the basic aspects of respiration, which pose greater practical challenges to study and don't generalize as easily to broad categories of organisms). Second, the quantitative nature of important phenomena allows the use of powerful mathematical and statistical tools, leading to well defined predictions about measurable quantities and a greater ease in testing and ruling out bad hypotheses. Science is all about ruling out bad hypotheses, and doing this efficiently means efficient progress towards well supported theories. Finally, there are fewer ethical conflicts in studying things that aren't alive - people don't respond to seeing someone smash a rock, drop a marble, or melt down metals in the same way they respond to seeing someone dissect a live dog. All biologists know about animal rights but to a geologist, mineral rights are rarely a problem in the lab!
Finally, thanks to the suggestion by Nick Sly, I took a look at the 1964 Science article "Strong Inference: Certain systematic methods of scientific thinking may produce much more rapid progress than others". I highly recommend reading it over, as well as T.C. Chamberlin's 1890 paper "The Method of Multiple Working Hypotheses" which can be found here (from the Wikipedia entry on Chamberlin), plus the text here (ed. 1999) with typographical errors corrected, and subheadings added, and lastly this modern version re-written by L. Bruce Railsback in case you find "Chamberlin's paper is too long, too high-blown, and too sexist for modern students."
In Platt 1964, he describes how some areas of science fail to progress by leaving behind the method of testing multiple hypotheses and "strong inferences" - complete with a rather entertaining list of pseudoscientific approaches I'll leave you to consider:
To avoid unnecessary suspense, here is the quick version of at least some of the major factors contributing to the (relatively) recent advancement of ecology (and other areas of science):
1. The proper application of the scientific method.So how have these factors shaped ecology? Lets have a look...
2. Technological advances and advances in other natural and physical sciences.
3. Various other factors (some helpful, some not) arising from our growing population. Foremost among this last category are some of the big questions regarding things like climate change, responsible (sustainable) use of natural resources, public health issues, and so on. On to the not-so-quick version!
Ecology is a relatively new science - born of numerous biological disciplines, only arriving as its own field in the late 1800s to early 1900s. It is broad and overarching in scope, and is rooted in many of the other sciences - after all, that bit about the environment in the given definition of ecology frequently requires ecologists to dabble in other areas of the physical and natural sciences in order to answer ecological questions. Because of this, progress in other scientific fields affect progress in ecology (e.g. imagine doing ecological research without chemistry or genetics!).
So what about that "using the scientific method" bit? Just to give things some context (and yes, this is a bit of a tangent), consider the question "How long have people been using critical thought and (even crude implementations of) the scientific method as a way to understand the physical and natural world?" If you need a refresher on the history of life and the geologic timescale, you might check out my previous post on the subject, or the geologic time scale page on Wikipedia.
The punchline here is that modern humans are thought to have appeared around 200,000+ years ago with the first known attempts to try and learn about the world through reason and careful observation of natural phenomena occurring a little over 3,000 years ago. So as far as human existence goes, we're pretty new to the game of doing science!
Why this little diversion back to the pleistocene and the formation of the earth? First, because a lot went on before we humans showed up to the party, and that immense history has shaped the world we live in. It took us a while to get even a crude understanding of the big picture (e.g. we recently thought the earth was flat!) and the more that history of life on earth is pieced together (thanks to the efforts of scientists in areas like physics, chemistry, geology, biology, and paleontology), the better we understand today's world and how it works.
Secondly, the human population size and ability to create and share knowledge has changed dramatically in recent centuries, and this has had a resounding impact on the world of science. As you may know, the human population has experienced near exponential population growth over the past few thousand years. It has more than doubled in the past 50 years, and has increased more than 20 fold in the last 1000 years. The increase has raised new problems and questions to address (although, human population growth isn't just a 20th century concern), and it has also lead to increased means of communication, transportation, the accumulation and availability of knowledge (e.g. the internet), and of course the simple increase in worker-hours available for doing scientific research. In short - demographic changes have had (and will likely continue to have) a bit impact on the progression and direction of scientific advancement.
With that, let's finish with a more focused look at ecology (and its ancestors like natural history, biogeography, botany, zoology, etc.), by comparing it to what are commonly considered "hard sciences" like physics and chemistry.
Reaching to my nearest chemistry text (Physical Chemistry, by P. Atkins) and opening it to page 1, the book begins with an introductory chapter laying out what physical chemistry is: "the branch of chemistry that establishes and develops the principles of the subject. Its concepts are used to explain and interpret observations on the physical and chemical properties of matter." The first section of this chapter isn't about chemistry, or physics for that matter - but instead something more basic and fundamental to the topic of physical chemistry: the section is titled "The structure of science," and gives an overview of terms like law, hypothesis, and theory as applied to the subject at hand. This is how (again, in my opinion) every science text book should begin: lay out the foundations of using the scientific method for the subject at hand, then build up from there.
This is in large part what makes a "hard science" - emphasizing how to do good science, and properly applying it to understand natural phenomena. Admittedly, it also helps that atoms and molecules are more predictable in their behavior when it comes to chemistry and physics (versus the behavior of organisms), and in many ways easier to measure for purposes of data collection.
Field ecology, for example has its roots in natural history - which I'll (perhaps unfairly) use here as an example of a field that was slow to move from making observations to making testable hypotheses and conducting experiments to see which ideas about how things work would hold up to empirical evidence. In addition to the significant practical difficulties of studying living organisms, this relatively slow acceptance to use the scientific method to understand ecological phenomena seems attributable to: (1) the fact that life is amazingly diverse, and broad generalizations about that diversity are hard to make. Plus, for some those generalizations can spoil the beauty and mystique of nature, leading to less focus on general and easy to understand phenomena, and more focus on things that are unique, complex and harder to understand; and (2) insightful observations of natural (undisturbed) phenomena were long deemed valuable enough - which can elevate the process of observation above the importance of doing experiments (that is, testing hypotheses) - distracting from the development of general theories by the scientific method, while perhaps over-focusing on describing observed phenomena.
As technology and our understanding from other areas in science have progressed, so to have our observational capabilities (and thus what sorts of things we can test experimentally). In ecology and other areas of biology, these advancements have opened up entire new worlds to observe and questions to be answered.
Early on, physics and chemistry had had a few things going in their favor in this regard. First, they are by their very nature easier to think about and study in a quantitative and general sense (perhaps early physics more so than early chemistry). This imparts to them three important qualities as disciplines in science. First, theories apply broadly to natural phenomena (e.g. nearly all objects fall just the same when dropped from a moderate distance - contrast with understanding the basic aspects of respiration, which pose greater practical challenges to study and don't generalize as easily to broad categories of organisms). Second, the quantitative nature of important phenomena allows the use of powerful mathematical and statistical tools, leading to well defined predictions about measurable quantities and a greater ease in testing and ruling out bad hypotheses. Science is all about ruling out bad hypotheses, and doing this efficiently means efficient progress towards well supported theories. Finally, there are fewer ethical conflicts in studying things that aren't alive - people don't respond to seeing someone smash a rock, drop a marble, or melt down metals in the same way they respond to seeing someone dissect a live dog. All biologists know about animal rights but to a geologist, mineral rights are rarely a problem in the lab!
Finally, thanks to the suggestion by Nick Sly, I took a look at the 1964 Science article "Strong Inference: Certain systematic methods of scientific thinking may produce much more rapid progress than others". I highly recommend reading it over, as well as T.C. Chamberlin's 1890 paper "The Method of Multiple Working Hypotheses" which can be found here (from the Wikipedia entry on Chamberlin), plus the text here (ed. 1999) with typographical errors corrected, and subheadings added, and lastly this modern version re-written by L. Bruce Railsback in case you find "Chamberlin's paper is too long, too high-blown, and too sexist for modern students."
In Platt 1964, he describes how some areas of science fail to progress by leaving behind the method of testing multiple hypotheses and "strong inferences" - complete with a rather entertaining list of pseudoscientific approaches I'll leave you to consider:
I think, there are other areas of science today that are sick by comparison, because they have forgotten the necessity for alternative hypotheses and disproof. Each man has only one branch-or none-on the logical tree, and it twists at random without ever coming to the need for a crucial decision at any point. We can see from the external symptoms that there is something scientifically wrong. The Frozen Method. The Eternal Surveyor. The Never Finished. The Great Man With a Single Hypothesis. The Little Club of Dependents. The Vendetta. The All-Encompassing Theory Which Can Never Be Falsified.If you've made it this far, I hope you enjoyed the read and found it at least somewhat thought provoking. Feel free to share any comments or questions by posting below :)
Experiments, Mathematics and Theory in Ecology
By
Paul
on
Friday, March 13, 2009 at 9:50 PM
Labels: ecology, history, mathematical biology, philosophy of science, technology

Labels: ecology, history, mathematical biology, philosophy of science, technology
If you check wikipedia or dust off your favorite dictionary and look up the definition of "ecology" you will find something like the following:
Well, not quite. History tells us almost the opposite has been the case up until recently... very recently, come to think of it!
I had originally set out to write a single piece, but it got a bit long so I've split it into two parts: the first basically revisits the recent conversation (from the course I TA) that prompted all this, and the second is a bit of a followup heavily seasoned with a few tangents that are likely of interest.
Earlier this week in class, a friend of mine raised a question in class that caught me a little off guard. It made me realized something I had taken overlooked or granted during the past decade or two of my science education: only very, VERY recently did we begin to develop a real understanding of how organisms interact with (and respond to) the world around them. The same could probably be said of knowledge about the natural world!
But on to our example. In lecture this week (for the course "Theoretical Ecology"), we discussed some really nice work that included research done by Dr. Jef Huismann and others, currently at the Institute for Biodiversity and Ecosystem Dynamics at the University of Amsterdam.
During the hot summer months, a lake used for recreation near Amsterdam turns into a smelly, stagnant health hazard due to blooms of toxic cyanobacteria. Understandably, local parks officials wanted to find a way to continue recreational use of this increasingly smelly and toxic body of water without the drastic measures require to stop the actual problem of nutrient pollution (e.g. fertalizers) in the lake.
His group used very controlled laboratory experiments in conjunction with mathematical models of those experimental systems to understand how mixing patterns in water (e.g. due to temperature gradients) influence competition for light among different types of algae under controlled laboratory conditions (think little green beakers). These factors are known to shape the types and numbers of algae you see in small ponds and lakes, and presumably play a role in our lake. (For the philosophically inclined reader, this is using good ol' scientific reductionism being used to lay a conceptual foundation.)
Results from those small scale experiments were then combined with more complicated computer models of the hydrodynamics of an actual lake in order to understand how mixing could be used to control the algal community residing there. With that, they were able to use the models to see how different ways of artificially changing the hydrodynamics in the lake might provide a solution to the problem.
So what was the solution? Based on all the modeling and experimental work, it turned out that a little extra mixing in the right places would cause the good algae to replace the bad. With a few properly placed pumps to bubble the lake, it was returned to its more recreation-friendly state. (More details can be found in Jef's scientific papers, and also in Chapter 7 of the book Harmful Cyanobacteria - if you're interested.)
Along with the many other scientific details uncovered along the way, this is a really cool example of using experimental findings in conjunction with mathematical and/or computer models in order to do exemplary scientific work. The models extend our reasoning and deductive abilities and combined with nice experimental results, lead to a deeper understanding of how algal communities form in these sorts of ponds and lakes.
Much as mathematical models helped Newton understand and describe the laws of motion, Huismann and many other modern day ecologists use similar mathematical models to describe and make predictions about biological systems. But if the math is so similar, why weren't Newton's biologist friends (or at least their grandchildren) doing the same sorts of thing back in the 1700s?? What's so different now that we had to wait 200 years for in order to apply these techniques to biological systems the way Newton and his colleagues applied them to planetary motion?
After the instructor finished talking about Huismann's work (and some of its more technical details), a friend of mine raised his and asked essentially this question: Why didn't someone do this 50 years ago?? It seems so... rudimentary!
Naturally, we looked to the instructor anticipating his response, which was essentially this: Physicists have been using experiments and models to understand and describe natural processes since Galileo (around 1600) - Ecologists (and their biologist and other predecessors) have only been doing it since the early 1900s or later. It just took that long for folks to embrace the idea of doing experiments and using mathematics understand and describe the natural phenomena being observed.
This, admittedly, caught me a little off-guard. I'm sure my thoughts were something like "Wait, what? But, why!?" But in truth, it is an interesting question: why has it taken so long for some of the sciences to gain prominence in recent centuries and (more generally) throughout human history? What walls were broken down recently that unleashed the flood of scientific inquiry we see today?
Well, there are of course a number of ways to answer these questions - certainly many more than I am aware of. Still, I can point to a few of them. Check back for part II of this post in the next couple of days, where I'll try to address some of them.
Ecology: The branch of biology concerned with the relations between organisms and their environment.As a branch of biology, and thus a science, you might think that ecologists have centuries old traditions (much like physicists and chemists) - doing controlled experiments in their laboratories or gardens and using the scientific method to test hypotheses and formulate scientific theories. Right?
Well, not quite. History tells us almost the opposite has been the case up until recently... very recently, come to think of it!
I had originally set out to write a single piece, but it got a bit long so I've split it into two parts: the first basically revisits the recent conversation (from the course I TA) that prompted all this, and the second is a bit of a followup heavily seasoned with a few tangents that are likely of interest.
Earlier this week in class, a friend of mine raised a question in class that caught me a little off guard. It made me realized something I had taken overlooked or granted during the past decade or two of my science education: only very, VERY recently did we begin to develop a real understanding of how organisms interact with (and respond to) the world around them. The same could probably be said of knowledge about the natural world!
But on to our example. In lecture this week (for the course "Theoretical Ecology"), we discussed some really nice work that included research done by Dr. Jef Huismann and others, currently at the Institute for Biodiversity and Ecosystem Dynamics at the University of Amsterdam.
During the hot summer months, a lake used for recreation near Amsterdam turns into a smelly, stagnant health hazard due to blooms of toxic cyanobacteria. Understandably, local parks officials wanted to find a way to continue recreational use of this increasingly smelly and toxic body of water without the drastic measures require to stop the actual problem of nutrient pollution (e.g. fertalizers) in the lake.
His group used very controlled laboratory experiments in conjunction with mathematical models of those experimental systems to understand how mixing patterns in water (e.g. due to temperature gradients) influence competition for light among different types of algae under controlled laboratory conditions (think little green beakers). These factors are known to shape the types and numbers of algae you see in small ponds and lakes, and presumably play a role in our lake. (For the philosophically inclined reader, this is using good ol' scientific reductionism being used to lay a conceptual foundation.)
Results from those small scale experiments were then combined with more complicated computer models of the hydrodynamics of an actual lake in order to understand how mixing could be used to control the algal community residing there. With that, they were able to use the models to see how different ways of artificially changing the hydrodynamics in the lake might provide a solution to the problem.
So what was the solution? Based on all the modeling and experimental work, it turned out that a little extra mixing in the right places would cause the good algae to replace the bad. With a few properly placed pumps to bubble the lake, it was returned to its more recreation-friendly state. (More details can be found in Jef's scientific papers, and also in Chapter 7 of the book Harmful Cyanobacteria - if you're interested.)
Along with the many other scientific details uncovered along the way, this is a really cool example of using experimental findings in conjunction with mathematical and/or computer models in order to do exemplary scientific work. The models extend our reasoning and deductive abilities and combined with nice experimental results, lead to a deeper understanding of how algal communities form in these sorts of ponds and lakes.
Much as mathematical models helped Newton understand and describe the laws of motion, Huismann and many other modern day ecologists use similar mathematical models to describe and make predictions about biological systems. But if the math is so similar, why weren't Newton's biologist friends (or at least their grandchildren) doing the same sorts of thing back in the 1700s?? What's so different now that we had to wait 200 years for in order to apply these techniques to biological systems the way Newton and his colleagues applied them to planetary motion?
After the instructor finished talking about Huismann's work (and some of its more technical details), a friend of mine raised his and asked essentially this question: Why didn't someone do this 50 years ago?? It seems so... rudimentary!
Naturally, we looked to the instructor anticipating his response, which was essentially this: Physicists have been using experiments and models to understand and describe natural processes since Galileo (around 1600) - Ecologists (and their biologist and other predecessors) have only been doing it since the early 1900s or later. It just took that long for folks to embrace the idea of doing experiments and using mathematics understand and describe the natural phenomena being observed.
This, admittedly, caught me a little off-guard. I'm sure my thoughts were something like "Wait, what? But, why!?" But in truth, it is an interesting question: why has it taken so long for some of the sciences to gain prominence in recent centuries and (more generally) throughout human history? What walls were broken down recently that unleashed the flood of scientific inquiry we see today?
Well, there are of course a number of ways to answer these questions - certainly many more than I am aware of. Still, I can point to a few of them. Check back for part II of this post in the next couple of days, where I'll try to address some of them.
The mice of Gough Island: Opportunity knocking!
By
Paul
on
Thursday, February 19, 2009 at 1:59 AM
Labels: ecology, evolution, mammals, science basics

Labels: ecology, evolution, mammals, science basics
These large, carnivorous, non-native cousins of the ubiquitous house mouse (Mus musculus) are about to get scrubbed off of Gough Island in the south Atlantic as part of measures to protect the seabirds that breed there. But before they go, we get the opportunity to study the evolution and ecology of one of the most well studied vertebrates in the lab, only this time - mother nature has done the experiment for us!
If you try and read up on the mice of Gough Island (e.g. google “Gough” and “mouse”), you’ll hear about the damage they are doing to the island’s nesting sea birds – some of which are of great concern as they are not known to nest anywhere other than this one island.
The mice of Gough Island have a different story. They were accidentally introduced by ships in the 19th century, and have since become larger in size than the typical house mouse, weighing in at a whopping 35g (normal mice are nearly half that size)! If you’re curious as to how they have reached this size, consider their life on Gough Island. There are no large predators, and their diet includes a hearty (though seasonal) food source: seabird chicks! And we aren’t just talking about hapless, naked, sparrow-sized birds here - some of them (such as albatross) are as large as a turkey!
Interestingly, this is a classic example of what some call the "island rule" for the evolution of body size: small animals seem to evolve to be larger than their mainland counterparts, and large animals tend to be smaller. This from the sizable body of knowledge arising from studies of the evolution of body size (which, for example, might occur in response to resource limitation, sexual selection via competition for mating opportunities, predation, and even predation by humans).
Super-sized or not, in order to protect the island's breeding seabirds from this jumbo sized pest, the UK has awarded The Royal Society for the Protection of Birds (a conservation organization) funding to eradicate them from the island, and most of the world seems to be quite pleased about it.
"But wait!"
In our effort to save the seabird colonies (which I fully support, I’ll have you know) we may be destroying a fantastic opportunity to learn something from what scientists call a natural experiment - a situation that arises in nature but can reveal to us the kind of information we might hope to get from specifically designed scientific experiment. In this case, the evolution of a wild population that has been adapting to a new environment over the better part of a century or more.
So why is this particular population so noteworthy? I’m glad you asked! First, there been very significant phenotypic changes in this population (suggesting there are likely to be interesting genetic or other evolutionary changes in the population that are worth studying) - fortunately, people are already hard at work studying these hefty little rodents. Second, we know about some of the major aspects of the ecology and natural history of this population - an important first step to understanding the role their environment has played in shaping the evolutionary trajectory of the population.
If that doesn't seem promising enough, the house mouse is probably the most well studied vertebrate on earth! Taking the tools and insights gleaned from studying from studying mice in the laboratory and combining them with studies of wild populations seems like a promising approach to advance our understanding of evolution in wild populations.
So, as we embark on ridding this island of its pesky rodent problem, I do feel a little bummed to see a monkey wrench thrown into the system. What would those mice look like in another century? As much as I would love to know, however, the price of loosing even one of the sea bird species that nest there would be far to great a cost!
If the links above have left you wanting more, check out the Payseur Laboratory website for some of the work on understanding more about the mice of Gough Island, and the Global Invasive Species Database which includes video of mice attacking an Albatross chick.
If you try and read up on the mice of Gough Island (e.g. google “Gough” and “mouse”), you’ll hear about the damage they are doing to the island’s nesting sea birds – some of which are of great concern as they are not known to nest anywhere other than this one island.
The mice of Gough Island have a different story. They were accidentally introduced by ships in the 19th century, and have since become larger in size than the typical house mouse, weighing in at a whopping 35g (normal mice are nearly half that size)! If you’re curious as to how they have reached this size, consider their life on Gough Island. There are no large predators, and their diet includes a hearty (though seasonal) food source: seabird chicks! And we aren’t just talking about hapless, naked, sparrow-sized birds here - some of them (such as albatross) are as large as a turkey!
Interestingly, this is a classic example of what some call the "island rule" for the evolution of body size: small animals seem to evolve to be larger than their mainland counterparts, and large animals tend to be smaller. This from the sizable body of knowledge arising from studies of the evolution of body size (which, for example, might occur in response to resource limitation, sexual selection via competition for mating opportunities, predation, and even predation by humans).
Super-sized or not, in order to protect the island's breeding seabirds from this jumbo sized pest, the UK has awarded The Royal Society for the Protection of Birds (a conservation organization) funding to eradicate them from the island, and most of the world seems to be quite pleased about it.
"But wait!"
In our effort to save the seabird colonies (which I fully support, I’ll have you know) we may be destroying a fantastic opportunity to learn something from what scientists call a natural experiment - a situation that arises in nature but can reveal to us the kind of information we might hope to get from specifically designed scientific experiment. In this case, the evolution of a wild population that has been adapting to a new environment over the better part of a century or more.
So why is this particular population so noteworthy? I’m glad you asked! First, there been very significant phenotypic changes in this population (suggesting there are likely to be interesting genetic or other evolutionary changes in the population that are worth studying) - fortunately, people are already hard at work studying these hefty little rodents. Second, we know about some of the major aspects of the ecology and natural history of this population - an important first step to understanding the role their environment has played in shaping the evolutionary trajectory of the population.
If that doesn't seem promising enough, the house mouse is probably the most well studied vertebrate on earth! Taking the tools and insights gleaned from studying from studying mice in the laboratory and combining them with studies of wild populations seems like a promising approach to advance our understanding of evolution in wild populations.
So, as we embark on ridding this island of its pesky rodent problem, I do feel a little bummed to see a monkey wrench thrown into the system. What would those mice look like in another century? As much as I would love to know, however, the price of loosing even one of the sea bird species that nest there would be far to great a cost!
If the links above have left you wanting more, check out the Payseur Laboratory website for some of the work on understanding more about the mice of Gough Island, and the Global Invasive Species Database which includes video of mice attacking an Albatross chick.
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